Atp-Dependent RNA Helicase Ddx3x

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent RNA Helicase Ddx3x
  Conformer 1
(PDB)
5e7i (A)
  Conformer 2
(PDB)
5e7j (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 261 1.36   136 - 408   502 - 507   510 - 510
2 153 0.66   416 - 501   508 - 509   511 - 575

Sequence


           ________________________________________________________________________________________________________________________ 
 5e7i(A) : *DDWSKPLPPSERLEQELFSGdDIPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEgRRKQY 
         :                                                                                                                          
 5e7j(A) : EDDWSKPLPPSERLEQELFSGG-iPVEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMK----kQY 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 5e7i(A) : PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 
         :                                                                                                                          
 5e7j(A) : PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFP 
           ________________________________________________________________________________________________________________________ 

           __________________407___________________________________________________________________________________________501___50 
 5e7i(A) : KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 
         :                                                                                                                          
 5e7j(A) : KEIQMLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLD 
           __________________407___________________________________________________________________________________________501___50 

           7_____________________________________________________________________________                                           
 5e7i(A) : ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYE*******                                           
         :                                                                                                                          
 5e7j(A) : ISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSS                                           
           7_____________________________________________________________________________                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.8
Translation
(A)
0.8
Closure
(%)
83.8
Bending Residues
( green )
  407 - 416
  501 - 502
  507 - 511
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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