Atp-Dependent RNA Helicase Eif4a

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent RNA Helicase Eif4a
  Conformer 1
(PDB)
2vso (A)
  Conformer 2
(PDB)
2j0s (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 2.85   14 - 222
2 154 2.06   232 - 391

Sequence


           ________________________________________________________________________________________________________________________ 
 2vso(A) : *******QIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHAC 
         :                                                                                                                          
 2j0s(A) : EDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHAC 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________222_____________________ 
 2vso(A) : IgLRDA-----------QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEE 
         :                                                                                                                          
 2j0s(A) : IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVER 
           ________________________________________________________________________________________________239_____________________ 

           ________________________________________________________________________________________________________________________ 
 2vso(A) : EEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR------kGVAINF 
         :                                                                                                                          
 2j0s(A) : EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINF 
           ________________________________________________________________________________________________________________________ 

           _______________________________                                                                                          
 2vso(A) : VTNEDVGAMRELEKFYSTQIEELPSDIATL*                                                                                          
         :                                                                                                                          
 2j0s(A) : VKNDDIRILRDIEQYYSTQIDEMPMNVADLI                                                                                          
           _______________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
39.4
Translation
(A)
-10.3
Closure
(%)
97.8
Bending Residues
( green )
  222 - 232
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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