Bovine Mitochondrial F1-Atpase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Bovine Mitochondrial F1-Atpase
  Conformer 1
(PDB)
1e79 (G)
  Conformer 2
(PDB)
1h8e (G)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 38 0.39   3 - 24   235 - 250
2 182 0.67   25 - 234
3 20 0.17   251 - 270

Sequence


           ______________________24________________________________________________________________________________________________ 
 1e79(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADIKTPElIIGVSSDRGLCGAIHSSVAKQMKSEAANLkEVKIIGVGDKIRSILHRTHSDQFLVTFK 
         :                                                                                                                          
 1h8e(G) : ATLKDITRRLKSIKNIQKITKSMKMVAAAKYARAERELKPARVYGVGSLALYEKADI----lIIGVSSDRGLCGAIHSSVAKQMKSEAANLkEVKIIGVGDKIRSILH---------tFK 
           ______________________24________________________________________________________________________________________________ 

           ______________________________________________________________________________________________________234_____________25 
 1e79(G) : EVGRRPPTFGDASVIALELLNSGYEFDEGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLT 
         :                                                                                                                          
 1h8e(G) : EVGRRPPTFGDASVIALELLN------eGSIIFNRFRSVISYKTEEKPIFSLDTISSAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLT 
           ______________________________________________________________________________________________________234_____________25 

           0______________________                                                                                                  
 1e79(G) : FNRTRQAVITKELIEIISGAAAL                                                                                                  
         :                                                                                                                          
 1h8e(G) : FNRTRQAVITKELIEIISGAAAL                                                                                                  
           0______________________                                                                                                  

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.3
Translation
(A)
0.2
Closure
(%)
7.4
Bending Residues
( green )
  24 - 25
  234 - 235
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
11.6
Translation
(A)
0.1
Closure
(%)
6.6
Bending Residues
( green )
  250 - 253
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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