Autoinducer 2-Binding Periplasmic Protein Luxp

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Autoinducer 2-Binding Periplasmic Protein Luxp
  Conformer 1
(PDB)
1zhh (A)
  Conformer 2
(PDB)
2hje (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 44 7.44   49 - 74   77 - 82   86 - 97
2 23 7.57   75 - 76   83 - 85   98 - 115

Sequence


           ________________________________________________________________________________________________________________________ 
 1zhh(A) : **********************************************************************************************************TQVLNGYWGYQEFL 
         :                                                                                                                          
 2hje(A) : SKQQTSALIHNIFDSHFAAIQIHHDSNSKSEVIRDFYTDRDTDVLNFFFLSIDQSDPSHTPEFRFLTDHKGIIWDDGNAHFYGVNDLILDSLANRVSFSNNWYYINVMTSIGSRHMLVRR 
           ________________________________________________________________________________________________________________________ 

           _____________________________________74______82_85__________97__________________________________________________________ 
 1zhh(A) : DEFPEQRNLTNALSEAVRAQPVPLSKPTQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKL 
         :                                                                                                                          
 2hje(A) : VPILDPSTGEVLGFSFNAVVLDNNFALMEKLKSESNVDNVVLVANSVPLANSLIGDEPYNVADVLQlLVIETPIVVNAVTTELCLLTVQD****************************** 
           ____________________________________210_____218____________233__________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1zhh(A) : ILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKATKQSGYDAAKASLAKHPDVDFIYACSTDVALGAVDA 
         :                                                                                                                          
 2hje(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________                               
 1zhh(A) : LAELGREDIMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMAEAIKWDLEDKPVPTVYSGDFEIVTKADSPERIEALKKRAFRYSDN                               
         :                                                                                                                          
 2hje(A) : ******************************************************************************************                               
           __________________________________________________________________________________________                               

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
175.5
Translation
(A)
0.3
Closure
(%)
44.2
Bending Residues
( green )
  74 - 78
  82 - 83
  85 - 86
  97 - 98
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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