Autolysin E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Autolysin E
  Conformer 1
(PDB)
4pia (A)
  Conformer 2
(PDB)
6fxo (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 112 3.4   87 - 88   90 - 90   95 - 199   203 - 205   247 - 252
2 102 2.98   36 - 86   89 - 89   91 - 94   200 - 202   206 - 246   253 - 256

Sequence


           _________________________________________________________83_________94__________________________________________________ 
 4pia(A) : ****AAANDVNYSFDEAVSMQQG-KGIVQTKEEDGKFVEANNNEIAKAMTIS----dNDMKYMDITEKVP--MSESEVNQLLKGKGILENRGKVFLEAQEKYEVNVIYLVSHALVETGNG 
         :                                                                                                                          
 6fxo(A) : AAELIKYNQTGMTLNQVAQIQAGLQYKPQVQRVPGKWTDANFNDVKHAMDTKRLAQDPALKYQFLRLDQPQNISIDKINQFLKGKGVLENQGAAFNKAAQMYGINEVYLISHALLETGNG 
           _________________________________________________________59_________70__________________________________________________ 

           ______________________________________________________199___205______________________________________246___252______     
 4pia(A) : KSELAKGIKDGKKRYYNFFGIGAFDSSAVRSGKSYAEKEQWTSPDKAIIGGAKFIRNEYFENNQLNLYQMRWNPENPAQHQYASDIRWADKIAKLMDKSYKQFGIKKDDIRQTYYK     
         :                                                                                                                          
 6fxo(A) : TSQLAKGtK-----YHNVFGIAAYDNDPLREGIKYAKQAGWDTVSKAIVGGAKFIGNSYVKAGQNTLYKMRWNPAHPGTHQYATDVDWANINAKIIKGYYDKIGEVGKYFDIPQYK     
           ______________________________________________________172___178______________________________________219___225______     

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.7
Translation
(A)
0.0
Closure
(%)
97.6
Bending Residues
( green )
  83 - 92
  94 - 95
  199 - 200
  202 - 203
  205 - 206
  246 - 247
  252 - 253
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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