Avermectin-Sensitive Glutamate-Gated Chloride Channel Glucl Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Avermectin-Sensitive Glutamate-Gated Chloride Channel Glucl Alpha
  Conformer 1
(PDB)
3rhw (A)
  Conformer 2
(PDB)
4tnv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 199 0.97   3 - 44   49 - 208
2 134 1.27   45 - 48   209 - 338

Sequence


           __________________________________________44__48________________________________________________________________________ 
 3rhw(A) : SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLY 
         :                                                                                                                          
 4tnv(A) : SDSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTVGHQIWMPDTFFPNEKQAYKHT---pNVLIRIHNDGTVLY 
           __________________________________________44__48________________________________________________________________________ 

           _____________________________________________________________________________________208________________________________ 
 3rhw(A) : SVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRT 
         :                                                                                                                          
 4tnv(A) : SVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRT 
           _____________________________________________________________________________________208________________________________ 

           ____________________________________________________________________________________________________                     
 3rhw(A) : AIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGH                     
         :                                                                                                                          
 4tnv(A) : AIPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFVFNILYWSRFGH                     
           ____________________________________________________________________________________________________                     

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.0
Translation
(A)
-0.7
Closure
(%)
19.7
Bending Residues
( green )
  44 - 45
  48 - 49
  208 - 209
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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