Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
1l7z (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 70 0.93   5 - 74
2 67 1.25   75 - 144

Sequence


           ________________________________________________________________67______________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK-sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 1l7z(A) : *QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
           ________________________________________________________________67______________________________________________________ 

           ________________________                                                                                                 
 5k8q(A) : MIREADIDGDGQVNYEEFVQMMTA                                                                                                 
         :                                                                                                                          
 1l7z(A) : MIREADIDGDGQVNYEEFVQMMT*                                                                                                 
           ________________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
176.0
Translation
(A)
0.0
Closure
(%)
81.0
Bending Residues
( green )
  67 - 76
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download