Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
5k8q (A)
  Conformer 2
(PDB)
4zlk (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 64 0.68   81 - 144
2 55 0.39   9 - 63

Sequence


           ____________________________________________________________63__________________________________________________________ 
 5k8q(A) : DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKsEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
         :                                                                                                                          
 4zlk(B) : *****EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA----sEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM 
           ____________________________________________________________63__________________________________________________________ 

           _______________________                                                                                                  
 5k8q(A) : IREADIDGDGQVNYEEFVQMMTA                                                                                                  
         :                                                                                                                          
 4zlk(B) : IREADIDGDGQVNYEEFVQMMT*                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
153.1
Translation
(A)
-6.0
Closure
(%)
68.0
Bending Residues
( green )
  63 - 82
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download