Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin
  Conformer 1
(PDB)
6aky (A)
  Conformer 2
(PDB)
6gpx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 263 1.47   26 - 1001   1053 - 306
2 51 0.4   1002 - 1052

Sequence


           ________________________________________________________________________________________________________________________ 
 6aky(A) : CQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALKA 
         :                                                                                                                          
 6gpx(A) : ****DVKQIGAQLLPPLYSLVFIFGFVGNMLVVLILINYKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKLFTGLYHIGYFGGIFFIILLTIDRYLAIVH------- 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________219________________________________________ 
 6aky(A) : RTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDD 
         :                                                                                                                          
 6gpx(A) : -tVTFGVVTSVITWLVAVFASVPNIIFTKCQKEDSVYVCGPYFPRG----WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPDD 
           _____________________________________________________________________________227________________________________________ 

           ____________1052__________________________________________________________________________________________               
 6aky(A) : WVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYL******               
         :                                                                                                                          
 6gpx(A) : WVCPLCGVGKDQFEEVE------rDVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTETLGMTHCCINPIIYAFVGEKFRSLFHIALGE               
           _____________283__________________________________________________________________________________________               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
60.6
Translation
(A)
-5.4
Closure
(%)
53.8
Bending Residues
( green )
  219 - 1002
  1052 - 233
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download