Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chimera Protein Of C-C Chemokine Receptor Type 5 And Rubredoxin
  Conformer 1
(PDB)
4mbs (A)
  Conformer 2
(PDB)
4mbs (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 0.19   46 - 50   58 - 74   111 - 161   195 - 198   206 - 223   1051 - 242   291 - 303
2 135 0.27   22 - 45   51 - 57   75 - 110   162 - 163   169 - 179   199 - 205   243 - 290
3 20 0.24   164 - 168   180 - 194
4 50 0.04   1001 - 1050

Sequence


           _________________________45_________56________________74_________________________________110____________________________ 
 4mbs(A) : PCQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALK 
         :                                                                                                                          
 4mbs(B) : PCQKINVKQIAARLLPPLYSLVFIFGFVGNMLVILILINYKRLKSMTDIYLLNLAISDLFFLLTVPFWAHYAAAQWDFGNTMCQLLTGLYFIGFFSGIFFIILLTIDRYLAVVHAVFALK 
           _________________________45_________56________________74_________________________________110____________________________ 

           ___________________160_____168________179___________193__198____205_______________223___________________________________ 
 4mbs(A) : ARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPD 
         :                                                                                                                          
 4mbs(B) : ARTVTFGVVTSVITWVVAVFASLPNIIFTRSQKEGLHYTCSSHFPYSQYQFWKNFQTLKIVILGLVLPLLVMVICYSGILKTLLRMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIPD 
           ___________________160_____168________179___________193__198____205_______________223___________________________________ 

           ___________1050_________________242_____________________________________________290_______________________               
 4mbs(A) : DWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ               
         :                                                                                                                          
 4mbs(B) : DWVCPLCGVGKDQFEEVEEEKKRHRDVRLIFTIMIVYFLFWAPYNIVLLLNTFQEFFGLNNCSSSNRLDQAMQVTETLGMTHCCINPIIYAFVGEEFRNYLLVFFQ               
           ___________1050_________________242_____________________________________________290_______________________               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 2.3 0.0 47.1   45 - 51   56 - 61   74 - 75   110 - 111   160 - 163   198 - 199   205 - 206   242 - 243   290 - 291 Bending Region Analysis
1 3 5.8 0.1 35.7   193 - 197 Bending Region Analysis
1 4 1.8 0.1 15.9   223 - 1003   1050 - 1051 Bending Region Analysis
2 3 4.8 0.1 99.8   162 - 164   168 - 169   179 - 180 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 4

Conformer 2 Contact:
Residue 4 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 2 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 2

Movement classification: Hinge

PyMOL Script

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