Chlorella Virus DNA Ligase-Adenylate

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Chlorella Virus DNA Ligase-Adenylate
  Conformer 1
(PDB)
2q2t (A)
  Conformer 2
(PDB)
1p8l (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 185 0.65   4 - 188
2 83 3.88   189 - 291

Sequence


           ________________________________________________________________________________________________________________________ 
 2q2t(A) : MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYI 
         :                                                                                                                          
 1p8l(A) : *AITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYI 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________186______________________________________________________ 
 2q2t(A) : TVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDY 
         :                                                                                                                          
 1p8l(A) : TVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKN--------fGY------------eDVMGSIEVDY 
           _______________________________________________________________186______________________________________________________ 

           _________________________________________________________                                                                
 2q2t(A) : DGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIR****                                                                
         :                                                                                                                          
 1p8l(A) : DGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEED                                                                
           _________________________________________________________                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
156.2
Translation
(A)
0.2
Closure
(%)
33.8
Bending Residues
( green )
  186 - 189
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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