Class I Histocompatibility Antigen (Hla-A2.1) (Alpha Chain)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Class I Histocompatibility Antigen (Hla-A2.1) (Alpha Chain)
  Conformer 1
(PDB)
3hla (A)
  Conformer 2
(PDB)
1ddh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 178 0.82   3 - 180
2 87 1.07   181 - 267

Sequence


           ________________________________________________________________________________________________________________________ 
 3hla(A) : GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDG 
         :                                                                                                                          
 1ddh(A) : MSHSLRYFVTAVSRPGFGEPRYMEVGYVDNTEFVRFDSDAENPRYEPRARWIEQEGPEYWERETRRANGNEQSFRVDLRTALRYYNQSAGGSHTLQWMAGCDVESDGRLLRGYWQFAYDG 
           ________________________________________________________________________________________________________________________ 

           _________________________________________________________180____________________________________________________________ 
 3hla(A) : KDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGT 
         :                                                                                                                          
 1ddh(A) : CDYIALNEDLKTWTAADMAAQITRRKWEQAGAAERDRAYLEGECVEWLRRYLKNGNATLLATDPPKAHVTHHRRPEGDVTLRCWALGFYPAEITLTWQLNGEELTQEMELVETRPAGDGT 
           _________________________________________________________180____________________________________________________________ 

           __________________________________                                                                                       
 3hla(A) : FQKWAAVVVPSGQEQRYTCHVQHEGLPKPL****                                                                                       
         :                                                                                                                          
 1ddh(A) : FQKWASVVVPLGKQQKYTCHVEHEGLPEPLTLRW                                                                                       
           __________________________________                                                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.8
Translation
(A)
0.2
Closure
(%)
93.9
Bending Residues
( green )
  180 - 183
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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