Cyclin-Dependent Kinase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclin-Dependent Kinase 2
  Conformer 1
(PDB)
1fin (A)
  Conformer 2
(PDB)
3pxr (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 243 1.59   5 - 32   57 - 143   167 - 294
2 20 2.97   33 - 56

Sequence


           _____________________________31_______________________56________________________________________________________________ 
 1fin(A) : MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 
         :                                                                                                                          
 3pxr(A) : MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIR----tEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHS 
           _____________________________31_______________________56________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1fin(A) : HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
         :                                                                                                                          
 3pxr(A) : HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________                                                               
 1fin(A) : PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                               
         :                                                                                                                          
 3pxr(A) : PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                               
           __________________________________________________________                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
35.9
Translation
(A)
0.3
Closure
(%)
71.1
Bending Residues
( green )
  31 - 33
  56 - 59
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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