Cyclohexanone Monooxygenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclohexanone Monooxygenase
  Conformer 1
(PDB)
3gwf (A)
  Conformer 2
(PDB)
3gwd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 368 0.84   8 - 48   54 - 56   58 - 147   188 - 190   216 - 304   322 - 332   384 - 532
2 139 0.56   49 - 53   57 - 57   148 - 187   191 - 215   305 - 321   333 - 383

Sequence


           __________________________________________48___53_56____________________________________________________________________ 
 3gwf(A) : *THTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLW 
         :                                                                                                                          
 3gwd(A) : TTHTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLW 
           __________________________________________48___53_56____________________________________________________________________ 

           ________________143_________________________________________187_________________________215_____________________________ 
 3gwf(A) : EVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNS 
         :                                                                                                                          
 3gwd(A) : EVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKNS 
           ________________143_________________________________________187_________________________215_____________________________ 

           _________________________________________________________304______________321________332________________________________ 
 3gwf(A) : AVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVV 
         :                                                                                                                          
 3gwd(A) : AVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVV 
           _________________________________________________________304______________321________332________________________________ 

           ______________381_______________________________________________________________________________________________________ 
 3gwf(A) : TEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEIANAT 
         :                                                                                                                          
 3gwd(A) : TEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEIANAT 
           ______________381_______________________________________________________________________________________________________ 

           ___________________________________________________                                                                      
 3gwf(A) : LF------------------vLFYLGGLRNYRAVMAEVAADGYRGFEVKS*                                                                      
         :                                                                                                                          
 3gwd(A) : LFTKGDSWIFGANIPGKKPSVLFYLGGLRNYRAVMAEVAADGYRGFEVKSA                                                                      
           ___________________________________________________                                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.8
Translation
(A)
-0.1
Closure
(%)
81.5
Bending Residues
( green )
  48 - 49
  53 - 54
  56 - 58
  143 - 155
  187 - 188
  190 - 191
  215 - 216
  304 - 305
  321 - 322
  332 - 333
  381 - 388
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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