3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Dehydroquinate Synthase
  Conformer 1
(PDB)
1nr5 (A)
  Conformer 2
(PDB)
1nrx (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 200 0.72   142 - 144   184 - 254   256 - 390
2 175 0.54   7 - 141   145 - 183   255 - 255

Sequence


           ________________________________________________________________________________________________________________________ 
 1nr5(A) : NPTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTG 
         :                                                                                                                          
 1nrx(A) : *PTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTG 
           ________________________________________________________________________________________________________________________ 

           _______________140_144____________________________________183___________________________________________________________ 
 1nr5(A) : FVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKAR 
         :                                                                                                                          
 1nrx(A) : FVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPG-hRFEGTEEILKAR 
           _______________140_144____________________________________183___________________________________________________________ 

           ________253_____________________________________________________________________________________________________________ 
 1nr5(A) : ILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPK 
         :                                                                                                                          
 1nrx(A) : ILASARHKAYVVSAD---gGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALD-----pK 
           ________253_____________________________________________________________________________________________________________ 

           ______________________________                                                                                           
 1nr5(A) : KKIVLLSAIGTPYETRASVVANEDIRVVLA                                                                                           
         :                                                                                                                          
 1nrx(A) : KKIVLLSAIGTPYETRASVVANEDIRVVLA                                                                                           
           ______________________________                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.0
Translation
(A)
-0.1
Closure
(%)
100.0
Bending Residues
( green )
  140 - 142
  144 - 147
  183 - 184
  253 - 256
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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