Dengue 4 Ns3 Full-Length Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dengue 4 Ns3 Full-Length Protein
  Conformer 1
(PDB)
2vbc (A)
  Conformer 2
(PDB)
5yvu (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 442 1.25   175 - 616
2 147 1.49   21 - 170

Sequence


           ________________________________________________________________________________________________________________________ 
 2vbc(A) : ********SEGVYRIMQRGLFGKTQVGVGIHMEGVFHTMWHVTRGSVICHETGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLTGEIGAVTLDF 
         :                                                                                                                          
 5yvu(B) : GALWDVPlSEGVYRIMQR---GkTQVGVGIHMEGVFHTMWHVTRGSVICHETGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLTGEIGAVTLDF 
           ________________________________________________________________________________________________________________________ 

           ____________________________________169_________________________________________________________________________________ 
 2vbc(A) : KPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIRYQTPAVKSD 
         :                                                                                                                          
 5yvu(B) : KPGTAGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAER----dYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIRYQTPAVKSE 
           ____________________________________169_________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2vbc(A) : HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGND 
         :                                                                                                                          
 5yvu(B) : HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAIFMTATPPGSIDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGND 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2vbc(A) : IANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTE 
         :                                                                                                                          
 5yvu(B) : IANCLRKSGKKVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2vbc(A) : AKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDF 
         :                                                                                                                          
 5yvu(B) : AKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVYADPMALKDF 
           ________________________________________________________________________________________________________________________ 

           ________                                                                                                                 
 2vbc(A) : KEFASGRK                                                                                                                 
         :                                                                                                                          
 5yvu(B) : KEFASGRK                                                                                                                 
           ________                                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
56.0
Translation
(A)
1.0
Closure
(%)
9.0
Bending Residues
( green )
  169 - 182
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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