D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Glyceraldehyde-3-Phosphate Dehydrogenase 4 (E.C.1.2.1.12)
  Conformer 1
(PDB)
2gd1 (O)
  Conformer 2
(PDB)
1npt (O)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 186 0.4   36 - 55   59 - 65   68 - 69   156 - 215   219 - 288   291 - 318
2 144 0.44   2 - 34   56 - 58   66 - 67   70 - 155   216 - 218   289 - 290   319 - 331

Sequence


           ______________________________31_____________________55________65_______________________________________________________ 
 2gd1(O) : AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 
         :                                                                                                                          
 1npt(O) : AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 
           ______________________________31_____________________55________65_______________________________________________________ 

           __________________________________155________________________________________________________215________________________ 
 2gd1(O) : PAKNEDITIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 
         :                                                                                                                          
 1npt(O) : PAKNEDITIVMGVNQDKYDPKAHHVISNASATTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSV 
           __________________________________155________________________________________________________215________________________ 

           ______________________________________________288___________________________318_______________                           
 2gd1(O) : VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL                           
         :                                                                                                                          
 1npt(O) : VDLVAELEKEVTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASKGL                           
           ______________________________________________288___________________________318_______________                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.4
Translation
(A)
-0.2
Closure
(%)
70.9
Bending Residues
( green )
  31 - 37
  55 - 59
  65 - 72
  155 - 156
  215 - 216
  218 - 219
  288 - 291
  318 - 319
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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