Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
5z2d (A)
  Conformer 2
(PDB)
5z2f (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 155 3.48   3 - 129   235 - 262
2 105 0.42   130 - 234

Sequence


           ________________________________________________________________________________________________________________________ 
 5z2d(A) : *MIRVAIGGPRGKMGQEAVHTVMNNENMELVAVLDHKDIGDLLSESPNFPASYEVPVFLNLESLIVTIKPDVFLDLTTPHQVFEHTMLCLQNNVRPVIGTTGFTDEQLQQCTILAEVNKL 
         :                                                                                                                          
 5z2f(A) : MMIRVAIGGPRGKMGQEAVHTVMNNENMELVAVLDHKDIGDLLSESPNFPASYEVPVFLNLESLIVTIKPDVFLDLTTPHQVFEHTMLCLQNNVRPVIGTTGFTDEQLQQCTILAEVNKL 
           ________________________________________________________________________________________________________________________ 

           _______129_____________________________________________________________________________________________________233______ 
 5z2d(A) : GCIVAPNFAIGAVLMMKFASLAAAYFPDVEIIEMHHDQKLDAPSGTAYKTAQMIAEVRPSHKQGHPNEKETLEGARGASYDGIPIHSVRLPGLIAHQQILFGGEGQLFTLRHDSYNRQSF 
         :                                                                                                                          
 5z2f(A) : GCIVAPNFAIGAVLMMKFASLAAAYFPDVEIIEMHHDQKLDAPSGTAYKTAQMIAEVRPSHKQGHPNEKETLEGARGASYDGIPIHSVRLPGLIAHQQILFGGEGQLFTLRHDSYNRQSF 
           _______129_____________________________________________________________________________________________________233______ 

           _________________________                                                                                                
 5z2d(A) : MSGVTFSINQVMEIKELVYGLENIL                                                                                                
         :                                                                                                                          
 5z2f(A) : MSGVTFSINQVMEIKELVYGLENIL                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
32.3
Translation
(A)
2.1
Closure
(%)
81.8
Bending Residues
( green )
  129 - 133
  233 - 235
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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