Dihydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dihydrodipicolinate Reductase
  Conformer 1
(PDB)
5z2d (A)
  Conformer 2
(PDB)
5zdf (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 26 6.75   233 - 258
2 20 9.47   213 - 232

Sequence


           ________________________________________________________________________________________________________________________ 
 5z2d(A) : MIRVAIGGPRGKMGQEAVHTVMNNENMELVAVLDHKDIGDLLSESPNFPASYEVPVFLNLESLIVTIKPDVFLDLTTPHQVFEHTMLCLQNNVRPVIGTTGFTDEQLQQCTILAEVNKLG 
         :                                                                                                                          
 5zdf(A) : ************************************************************************************************************************ 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________________232________ 
 5z2d(A) : CIVAPNFAIGAVLMMKFASLAAAYFPDVEIIEMHHDQKLDAPSGTAYKTAQMIAEVRPSHKQGHPNEKETLEGARGASYDGIPIHSVRLPGLIAHQQILFGGEGQLFTLRHDSYNRQSFM 
         :                                                                                                                          
 5zdf(A) : **************************************************************************************VRLPGLAAMRQGTRLFTPEQGEDLREALRRRRGS 
           ______________________________________________________________________________________________________________54________ 

           ________________________________________________________________________________________________________________________ 
 5z2d(A) : SGVTFSINQVMEIKELVYGLENIL************************************************************************************************ 
         :                                                                                                                          
 5zdf(A) : FQTTCEVTSETTFAAARRLREKASALAALNFASAKNPGGGFaQAQEEDLCRGSGLYFSLTSPQAEPYYAVNRQSHSALYTDHLIYSPQVPIFRDDAGQLLPAPVPVNIITAPAPNAGAVA 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________                           
 5z2d(A) : **********************************************************************************************                           
         :                                                                                                                          
 5zdf(A) : QSRPEQLPQVLPTLRERARRVLGVAAWMEQTHLVLGAWGCGVFRNDPAGVARTFRELLEGEAQGAFEHVTFAVLDNHPQHPKLGAFRRELESLC                           
           ______________________________________________________________________________________________                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
162.3
Translation
(A)
14.9
Closure
(%)
99.9
Bending Residues
( green )
  232 - 233
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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