Damage-Specific DNA Binding Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Damage-Specific DNA Binding Protein 1
  Conformer 1
(PDB)
2hye (A)
  Conformer 2
(PDB)
5hxb (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 766 1.43   4 - 393   707 - 1138
2 305 0.82   394 - 706

Sequence


           ________________________________________________________________________________________________________________________ 
 2hye(A) : MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 
         :                                                                                                                          
 5hxb(B) : *SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTA--lRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQs---IDIITRAHGNVQDRIGRPSETGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hye(A) : IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 
         :                                                                                                                          
 5hxb(B) : IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hye(A) : NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV 
         :                                                                                                                          
 5hxb(B) : NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEK--------tLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLN-----qGSYVVAMETFTNLGPIV 
           ________________________________________________________________________________________________________________________ 

           ______________________________393_______________________________________________________________________________________ 
 2hye(A) : DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETYDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 
         :                                                                                                                          
 5hxb(B) : DMCVVD---qGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDP--eTDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVS 
           ______________________________393_______________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hye(A) : QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH 
         :                                                                                                                          
 5hxb(B) : QEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPL--sNGLSPLCAIGLWTDISARILKLPSFEL-hKEMLGG-iIPRSILMTTFESSH 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________704________________ 
 2hye(A) : YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 
         :                                                                                                                          
 5hxb(B) : YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRS-sTTNVFACSDRPTVIYS-nHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES 
           _____________________________________________________________________________________________________704________________ 

           ________________________________________________________________________________________________________________________ 
 2hye(A) : PRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 
         :                                                                                                                          
 5hxb(B) : PRKICYQEVSQCFGVLSSRIEVQDt----TALRPSASTQALSSSVSSSKL-------------eEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hye(A) : AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKDVRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 
         :                                                                                                                          
 5hxb(B) : AEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2hye(A) : DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER 
         :                                                                                                                          
 5hxb(B) : DDDNFLGAENAFNLFVCQKD------eERQHLQEVGLFHLGEFVNVFCHGSLVMQN-------tQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHT-- 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________                                                             
 2hye(A) : KTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH                                                             
         :                                                                                                                          
 5hxb(B) : kTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDG---kREATADDLIKVVEELTRIH                                                             
           ____________________________________________________________                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
70.1
Translation
(A)
1.4
Closure
(%)
27.2
Bending Residues
( green )
  393 - 395
  704 - 709
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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