DNA Damage-Binding Protein 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Damage-Binding Protein 1
  Conformer 1
(PDB)
4a11 (A)
  Conformer 2
(PDB)
5hxb (Y)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 756 1.65   4 - 393   706 - 1138
2 304 0.85   394 - 705

Sequence


           ________________________________________________________________________________________________________________________ 
 4a11(A) : MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGI 
         :                                                                                                                          
 5hxb(Y) : *SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTA--lRPVKEVGMYGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQs---IDIITRAHGNVQDRIGRPSETGI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4a11(A) : IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH 
         :                                                                                                                          
 5hxb(Y) : IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQ-nVEAEASMVIAVPEPFGGAIIIGQESITYH 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4a11(A) : NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKtVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLN-------sYVVAMETFTNLGPIVDMCVVD 
         :                                                                                                                          
 5hxb(Y) : NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKt--LKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVD 
           ________________________________________________________________________________________________________________________ 

           ________________________393_____________________________________________________________________________________________ 
 4a11(A) : LERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKAL 
         :                                                                                                                          
 5hxb(Y) : ---qGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDP--eTDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKAL 
           ________________________393_____________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4a11(A) : VSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCAL 
         :                                                                                                                          
 5hxb(Y) : VSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPL---nGLSPLCAIGLWTDISARILKLPSFELLHKEMLGG-iIPRSILMTTFESSHYLLCAL 
           ________________________________________________________________________________________________________________________ 

           ______________________________________________________________________________________________703_______________________ 
 4a11(A) : GDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICY 
         :                                                                                                                          
 5hxb(Y) : GDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRS-sTTNVFACSDRPTVIYS-nHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICY 
           ______________________________________________________________________________________________703_______________________ 

           ________________________________________________________________________________________________________________________ 
 4a11(A) : QEVSQCFGVLSSRIEVQgTTALRPSASTQALSSSVSSSKLFSeEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV 
         :                                                                                                                          
 5hxb(Y) : QEVSQCFGVLSSRIEVQDtTALRPSASTQALSSSVSSSKL--eEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4a11(A) : AEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDS 
         :                                                                                                                          
 5hxb(Y) : AEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK-- 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4a11(A) : tDEERQHLQEVGLFHLGEFVNVFCHGSLVM--pTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVA 
         :                                                                                                                          
 5hxb(Y) : -DeERQHLQEVGLFHLGEFVNVFCHGSLVMQNpTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHT--kTEPATGFIDGDLIESFLDISRPKMQEVVA 
           ________________________________________________________________________________________________________________________ 

           ___________________________                                                                                              
 4a11(A) : NLQ-------aTADDLIKVVEELTRIH                                                                                              
         :                                                                                                                          
 5hxb(Y) : NLQYDDGkREATADDLIKVVEELTRIH                                                                                              
           ___________________________                                                                                              

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
71.1
Translation
(A)
1.3
Closure
(%)
25.2
Bending Residues
( green )
  393 - 395
  703 - 709
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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