DNA Gyrase B

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Gyrase B
  Conformer 1
(PDB)
1ei1 (A)
  Conformer 2
(PDB)
1kij (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 205 1.77   11 - 109   114 - 221
2 161 1.64   110 - 113   222 - 378

Sequence


           ________________________________________________________________________________________________100_____________________ 
 1ei1(A) : SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVS 
         :                                                                                                                          
 1kij(A) : *******AIRVLKGLEGVRHRPAMYIGGTGV-EGYHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSGGKFEQGAYKVSGGLHGVGAS 
           _________________________________________________________________________________________________99_____________________ 

           ___________________________________________________________________________________________________221__________________ 
 1ei1(A) : VVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGETE--KTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFVEYLNKNKTPIHPN 
         :                                                                                                                          
 1kij(A) : VVNALSEWTVVEVFREGKHHRIAFSRGEVTEPLRVVGEAPRGKTGTRVTFKPDPEIFGNL-RFDPSKIRARLREVAYLVAGLKLVFQDRQHGKEEVFLDKGGVASFAKALAEGEDLLYEK 
           ___________________________________________________________________________________________________221__________________ 

           ________________________________________________________________________________________________________________________ 
 1ei1(A) : IFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLVSSEVKSAVEQQMNELLAE 
         :                                                                                                                          
 1kij(A) : PFLIRGTHGEVEVEVGFLHTQGYNAEILTYANMIPTRDGGTHLTAFKSAYSRALNQYAKKAGLNKEKGPQPTGDDLLEGLYAVVSVKLPNPQFEGQTKGKLLNPEAGTAVGQVVYERLLE 
           ________________________________________________________________________________________________________________________ 

           _________________________________                                                                                        
 1ei1(A) : YLLENPTDAKIVVGKIIDAARAREAARRAREMT                                                                                        
         :                                                                                                                          
 1kij(A) : ILEENPRIAKAVYEKALRAAQAREAARKARELV                                                                                        
           _________________________________                                                                                        

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
19.8
Translation
(A)
0.7
Closure
(%)
90.2
Bending Residues
( green )
  100 - 114
  221 - 222
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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