Dnaj Homolog Subfamily B Member 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dnaj Homolog Subfamily B Member 1
  Conformer 1
(PDB)
3agz (A)
  Conformer 2
(PDB)
3agz (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 121 1.24   161 - 256   272 - 280   300 - 315
2 41 0.48   257 - 271   281 - 299   316 - 322

Sequence


           __________________________________________________________________________________________________256____________271_275 
 3agz(A) : ARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPT 
         :                                                                                                                          
 3agz(B) : ***KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPT 
           __________________________________________________________________________________________________256____________271_275 

           _____________________299_____________315_________________________                                                        
 3agz(A) : LDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI                                                        
         :                                                                                                                          
 3agz(B) : LDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLPI                                                        
           _____________________299_____________315_________________________                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.9
Translation
(A)
0.7
Closure
(%)
92.0
Bending Residues
( green )
  256 - 257
  271 - 272
  275 - 282
  299 - 300
  315 - 316
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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