D-Glyceraldehyde-3-Phosphate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name D-Glyceraldehyde-3-Phosphate Dehydrogenase
  Conformer 1
(PDB)
1dc6 (B)
  Conformer 2
(PDB)
1gad (O)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 185 0.34   2 - 156   215 - 218   265 - 267   271 - 273   285 - 290   314 - 328
2 141 0.24   157 - 214   219 - 264   268 - 270   274 - 284   291 - 313

Sequence


           ________________________________________________________________________________________________________________________ 
 1dc6(B) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
         :                                                                                                                          
 1gad(O) : TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTG 
           ________________________________________________________________________________________________________________________ 

           _________________________________156______________________________________________________213___________________________ 
 1dc6(B) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
         :                                                                                                                          
 1gad(O) : PSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVV 
           _________________________________156______________________________________________________213___________________________ 

           ____________________263_267___273________284___290____________________313_________________                               
 1dc6(B) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
         :                                                                                                                          
 1gad(O) : DLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK                               
           ____________________263_267___273________284___290____________________313_________________                               

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.9
Translation
(A)
0.1
Closure
(%)
64.5
Bending Residues
( green )
  156 - 157
  213 - 220
  263 - 265
  267 - 271
  273 - 274
  284 - 285
  290 - 291
  313 - 314
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download