4-Hydroxy-Tetrahydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Hydroxy-Tetrahydrodipicolinate Reductase
  Conformer 1
(PDB) 		5tek (A)
  Conformer 2
(PDB) 		5tjy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 129 0.47   3 - 107   218 - 241
2 112 0.7   108 - 217   242 - 243

Sequence


           _________________________________________________________________________________________________________104____________ 
 5tek(A) : QSGSGMRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHF 
         :                                                                                                                          
 5tjy(A) : ****GMRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHF 
           _________________________________________________________________________________________________________103____________ 

           _______________________________________________________________________________________________214______________________ 
 5tek(A) : AKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLT 
         :                                                                                                                          
 5tjy(A) : AKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLT 
           _______________________________________________________________________________________________213______________________ 

           __241____                                                                                                                
 5tek(A) : VGLEPLLDL                                                                                                                
         :                                                                                                                          
 5tjy(A) : VGLEPLLDL                                                                                                                
           __240____                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		31.9
Translation
(A) 		0.8
Closure
(%) 		89.2
Bending Residues
( green ) 		  104 - 113
  214 - 220
  241 - 243
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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