4-Hydroxy-Tetrahydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Hydroxy-Tetrahydrodipicolinate Reductase
  Conformer 1
(PDB)
5tek (A)
  Conformer 2
(PDB)
5ugv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 128 0.35   3 - 104   218 - 243
2 113 0.24   105 - 217

Sequence


           _________________________________________________________________________________________________________104____________ 
 5tek(A) : QSGSGMRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHF 
         :                                                                                                                          
 5ugv(A) : ****GMRVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHF 
           _________________________________________________________________________________________________________103____________ 

           _________________________________________________________________________________________________216____________________ 
 5tek(A) : AKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLT 
         :                                                                                                                          
 5ugv(A) : AKQAARFFDSAEVIELHHPHKADAPSGTAARTAKLIAEARKGLPPNPDATSTSLPGARGADVDGIPVHAVRLAGLVAHQEVLFGTEGETLTIRHDSLDRTSFVPGVLLAVRRIAERPGLT 
           _________________________________________________________________________________________________215____________________ 

           _________                                                                                                                
 5tek(A) : VGLEPLLDL                                                                                                                
         :                                                                                                                          
 5ugv(A) : VGLEPLLDL                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.8
Translation
(A)
0.5
Closure
(%)
99.9
Bending Residues
( green )
  104 - 106
  216 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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