4-Hydroxy-Tetrahydrodipicolinate Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 4-Hydroxy-Tetrahydrodipicolinate Reductase
  Conformer 1
(PDB)
5us6 (A)
  Conformer 2
(PDB)
5us6 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 145 0.32   3 - 125   237 - 265
2 111 0.17   126 - 236

Sequence


           ________________________________________________________________________________________________________________________ 
 5us6(A) : MVRIAVAGAAGRMGRNLVKAAHHNPVAKVAAGSERPESSLVGVDLGELCGEGKFDVVVCDDLAKQIDQFDVIIDFTAPASTLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVV 
         :                                                                                                                          
 5us6(D) : MVRIAVAGAAGRMGRNLVKAAHHNPVAKVAAGSERPESSLVGVDLGE-------dVVVCDDLAKQIDQFDVIIDFTAPASTLNNLALCQQYGKSIVIGTTGFTEEQREQIDLVAQQVPVV 
           ________________________________________________________________________________________________________________________ 

           _124___________________________________________________________________________________________________________234______ 
 5us6(A) : MAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKVDAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA 
         :                                                                                                                          
 5us6(D) : MAPNYSVGVNLVFKLLEKAAKVMGDYCDIEIVEAHHRHKVDAPSGTAIGMGEAIAGAMGNKLSDVAVYAREGITGERTKDEIGFATIRAGDIVGEHTAMFADIGERVEITHKATDRMTFA 
           _124___________________________________________________________________________________________________________234______ 

           ___________________________                                                                                              
 5us6(A) : NGAVKAAVWLHEKPAGFYTMTDVLGLN                                                                                              
         :                                                                                                                          
 5us6(D) : NGAVKAAVWLHEKPAGFYTMTDVLGLN                                                                                              
           ___________________________                                                                                              

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
24.6
Translation
(A)
0.9
Closure
(%)
96.3
Bending Residues
( green )
  124 - 128
  234 - 238
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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