Alcohol Dehydrogenase E Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alcohol Dehydrogenase E Chain
  Conformer 1
(PDB)
7adh  
  Conformer 2
(PDB)
1axg (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 219 0.8   3 - 93   95 - 167   173 - 181   296 - 296   321 - 334   340 - 369   372 - 372
2 151 0.96   94 - 94   168 - 172   182 - 295   297 - 320   335 - 339   370 - 371

Sequence


           ___________________________________________________________________________________________93___________________________ 
 7adh    : STAGXvIXcXaAVLWEEXXpFSIEEVEVAPPXaHEVRIXmVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDXvIPLFTPQCGXcRVCKHPEGNFCLXnDLSMPR 
         :                                                                                                                          
 1axg(B) : STAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 
           ___________________________________________________________________________________________93___________________________ 

           ____________________________________________167__172______181___________________________________________________________ 
 7adh    : GTMQDGTSRFTCRGXpIHHFLGTSTFSQYTVVDEISVAXiDAASPLEXvCLIGCGFSTGYGSAVXvAXvTQGSTCAVFGLGGVGLSVIMGCXaAGAARIIGVDINXdXfAXaKEVGATEC 
         :                                                                                                                          
 1axg(B) : GTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC 
           ____________________________________________167__172______181___________________________________________________________ 

           ___________________________________________________294_______________________320___________334__339_____________________ 
 7adh    : VNPQDYXkPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSXdSVPXlVADFMAKKFALDPLITHVLPFEXiNEGFD 
         :                                                                                                                          
 1axg(B) : VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFD 
           ___________________________________________________294_______________________320___________334__339_____________________ 

           ______369_____                                                                                                           
 7adh    : LLRSGESIRTILTF                                                                                                           
         :                                                                                                                          
 1axg(B) : LLRSGESIRTILTF                                                                                                           
           ______369_____                                                                                                           

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.8
Translation
(A)
-0.1
Closure
(%)
84.2
Bending Residues
( green )
  93 - 95
  167 - 168
  172 - 173
  181 - 182
  294 - 300
  320 - 321
  334 - 335
  339 - 340
  369 - 372
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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