5'-Nucleotidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5'-Nucleotidase
  Conformer 1
(PDB)
4h2b (A)
  Conformer 2
(PDB)
4h2i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 309 0.65   28 - 336
2 211 1.14   337 - 547

Sequence


           ________________________________________________________________________________________________________________________ 
 4h2b(A) : PWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIS 
         :                                                                                                                          
 4h2i(A) : MWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4h2b(A) : ASGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPF 
         :                                                                                                                          
 4h2i(A) : AKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPF 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________________________328_________________________________________________________ 
 4h2b(A) : IVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHADEMFWNHVS 
         :                                                                                                                          
 4h2i(A) : IVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHADEMFWNHVS 
           ____________________________________________________________328_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 4h2b(A) : MCILNGGGIRSPIDERNDGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTSCRVPSYDPLKMDEVYKVILPNFLANGG 
         :                                                                                                                          
 4h2i(A) : MCILNGGGIRSPIDERNDGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 4h2b(A) : DGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS                                                                             
         :                                                                                                                          
 4h2i(A) : DGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS                                                                             
           ____________________________________________                                                                             

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
100.2
Translation
(A)
-1.2
Closure
(%)
79.6
Bending Residues
( green )
  328 - 338
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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