5'-Nucleotidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5'-Nucleotidase
  Conformer 1
(PDB)
6xue (A)
  Conformer 2
(PDB)
4h2i (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 305 0.35   29 - 333
2 207 0.59   334 - 547

Sequence


           ________________________________________________________________________________________________________________________ 
 6xue(A) : *WELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIK 
         :                                                                                                                          
 4h2i(A) : MWELTILHTNDVHSRLEQTSEDSSKCVDASRCMGGVARLFTKVQQIRRAEPNVLLLDAGDQYQGTIWFTVYKGAEVAHFMNALRYDAMALGNHEFDNGVEGLIEPLLKEAKFPILSANIK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6xue(A) : AKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPF 
         :                                                                                                                          
 4h2i(A) : AKGPLASQISGLYLPYKVLPVGDEVVGIVGYTSKETPFLSNPGTNLVFEDEITALQPEVDKLKTLNVNKIIALGHSGFEMDKLIAQKVRGVDVVVGGHSNTFLYTGNPPSKEVPAGKYPF 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________331______________________________________________________ 
 6xue(A) : IVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRH-------hVS 
         :                                                                                                                          
 4h2i(A) : IVTSDDGRKVPVVQAYAFGKYLGYLKIEFDERGNVISSHGNPILLDSSIPEDPSIKADINKWRIKLDDYSTQELGKTIVYLDGSSQSCRFRECNMGNLICDAMINNNLRHADEMFWNHVS 
           _______________________________________________________________331______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 6xue(A) : MCILNGGGIRSPIDERNDGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGG 
         :                                                                                                                          
 4h2i(A) : MCILNGGGIRSPIDERNDGTITWENLAAVLPFGGTFDLVQLKGSTLKKAFEHSVHRYGQSTGEFLQVGGIHVVYDLSRKPGDRVVKLDVLCTKCRVPSYDPLKMDEVYKVILPNFLANGG 
           ________________________________________________________________________________________________________________________ 

           ____________________________________________                                                                             
 6xue(A) : DGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS                                                                             
         :                                                                                                                          
 4h2i(A) : DGFQMIKDELLRHDSGDQDINVVSTYISKMKVIYPAVEGRIKFS                                                                             
           ____________________________________________                                                                             

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
7.6
Translation
(A)
-0.8
Closure
(%)
64.0
Bending Residues
( green )
  331 - 338
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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