Cag-Alpha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cag-Alpha
  Conformer 1
(PDB)
1nlz (A)
  Conformer 2
(PDB)
1nly (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 187 0.57   136 - 326
2 108 0.29   26 - 135

Sequence


           ________________________________________________________________________________________________________________________ 
 1nlz(A) : LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
         :                                                                                                                          
 1nly(B) : LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKeNITEICYNGNKVVWVLKNNGEWQPFDVRDRKAFSLSRLhFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDET 
           ________________________________________________________________________________________________________________________ 

           _____135________________________________________________________________________________________________________________ 
 1nlz(A) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
         :                                                                                                                          
 1nly(B) : ISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIeFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRrPDRIILGEL 
           _____135________________________________________________________________________________________________________________ 

           _____________________________________________________________________________                                            
 1nlz(A) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK                                            
         :                                                                                                                          
 1nly(B) : RSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANsSSNSAARNIKFESLIEGFKDLIDiVHINHHKQCDEFYIK                                            
           _____________________________________________________________________________                                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.5
Translation
(A)
-0.2
Closure
(%)
77.7
Bending Residues
( green )
  135 - 136
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download