Adenylate Kinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase
  Conformer 1
(PDB) 		1aky  
  Conformer 2
(PDB) 		1dvr (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 124 1.26   5 - 18   21 - 33   68 - 131   181 - 182   186 - 216
2 54 0.98   19 - 20   132 - 180   183 - 185
3 34 1.13   34 - 67

Sequence


           ________________18_____________33_______________________________66______________________________________________________ 
 1aky    : **ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 
         :                                                                                                                          
 1dvr(B) : SSESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKV 
           ________________18_____________33_______________________________66______________________________________________________ 

           ________131______________________________________________180________________________________________                     
 1aky    : DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKN                     
         :                                                                                                                          
 1dvr(B) : DDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADILNKLGKN                     
           ________131______________________________________________180________________________________________                     

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		14.2
Translation
(A) 		0.2
Closure
(%) 		63.6
Bending Residues
( green ) 		  18 - 21
  131 - 132
  180 - 187
Bending Region Analysis
Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( yellow ) 		3
Rotation Angle
(deg) 		46.0
Translation
(A) 		1.6
Closure
(%) 		99.8
Bending Residues
( green ) 		  33 - 34
  66 - 72
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download