Atp-Dependent Phosphoenolpyruvate Carboxykinase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Atp-Dependent Phosphoenolpyruvate Carboxykinase
  Conformer 1
(PDB)
1j3b (A)
  Conformer 2
(PDB)
1j3b (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 352 0.32   4 - 231   244 - 342   391 - 420   457 - 457
2 155 0.61   232 - 243   343 - 390   421 - 456   458 - 525

Sequence


           ________________________________________________________________________________________________________________________ 
 1j3b(A) : QRLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTE 
         :                                                                                                                          
 1j3b(B) : QRLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAGADRRYRLAVRVVTE 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________________________________________________________231________24 
 1j3b(A) : SPWHALFARNMFILPRRFG------aFVPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSGTGKTTL 
         :                                                                                                                          
 1j3b(B) : SPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQAVPERDGTRSEVFVGISFQRRLVLIVGTKYAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSGTGKTTL 
           ___________________________________________________________________________________________________________231________24 

           2_________________________________________________________________________________________________342___________________ 
 1j3b(A) : STDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTRSSYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSP 
         :                                                                                                                          
 1j3b(B) : STDPERPLIGDDEHGWSEDGVFNFEGGCYAKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENTRSSYPIAHLENVVESGVAGHPRAIFFLSADAYGVLPPIARLSP 
           2_________________________________________________________________________________________________342___________________ 

           _________________390___________________________420_________________________________456__________________________________ 
 1j3b(A) : EEAMYYFLSGYTARVpRATFSACFGAPFLPMHPGVYARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGVPQELLNPRETWA 
         :                                                                                                                          
 1j3b(B) : EEAMYYFLSGYTARVpRATFSACFGAPFLPMHPGVYARMLGEKIRKHAPRVYLVNTGWTGGPYGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEVPLEAPGVPQELLNPRETWA 
           _________________390___________________________420_________________________________456__________________________________ 

           _______________________________________                                                                                  
 1j3b(A) : DKEAYDQQARKLARLFQENFQKYASGVAKEVAEAGPRTE                                                                                  
         :                                                                                                                          
 1j3b(B) : DKEAYDQQARKLARLFQENFQKYASGVAKEVAEAGPRT*                                                                                  
           _______________________________________                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.1
Translation
(A)
-0.1
Closure
(%)
95.7
Bending Residues
( green )
  231 - 232
  242 - 245
  342 - 343
  390 - 391
  420 - 421
  456 - 458
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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