DynDom - Protein Domain Motions

Atp Synthase Subunit Alpha Heart Isoform

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Atp Synthase Subunit Alpha Heart Isoform
Conformer 1 (PDB)	2jdi (B)
Conformer 2 (PDB)	1ohh (C)
Window Length	11
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	401	0.97	97 - 505
2	68	0.5	29 - 96

Sequence

`____________________________________________________________________________96__________________________________________` `2jdi(B) : ****VDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP` `:` `1ohh(C) : ADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSGLKGMSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIP` `____________________________________________________________________________96__________________________________________` `________________________________________________________________________________________________________________________` `2jdi(B) : RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFR` `:` `1ohh(C) : RISVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFR` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2jdi(B) : DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA` `:` `1ohh(C) : DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `2jdi(B) : QTRAMKQVAGTMKLELAQYREVA----lDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVT` `:` `1ohh(C) : QTRAMKQVAGTMKLELAQYREVAAFAdLDAATQQLLSRGVRLTELLKQGQYSPMAIEEQVAVIYAGVRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVT` `________________________________________________________________________________________________________________________` `________` `2jdi(B) : NFLAGFEA` `:` `1ohh(C) : NFLAGFEA` `________`

Morph

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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	8.2
Translation (A)	0.9
Closure (%)	57.1
Bending Residues ( green )	96 - 97
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

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