Beta-Xylosidase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Xylosidase
  Conformer 1
(PDB)
2bfg (H)
  Conformer 2
(PDB)
1w91 (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 170 0.47   11 - 19   228 - 252   277 - 315   334 - 396   416 - 426   429 - 444   470 - 476
2 250 0.55   22 - 227   253 - 276   316 - 333   427 - 428
3 30 0.59   402 - 414   453 - 469

Sequence


           ________11______________________________________________________________________________________________________________ 
 2bfg(H) : GVVNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNV 
         :                                                                                                                          
 1w91(A) : **VNVPSNGREKFKKNWKFCVGTGRLGLALQKEYLDHLKLVQEKIGFRYIRGHGLLSDDVGIYREVEIDGEMKPFYNFTYIDRIVDSYLALNIRPFIEFGFMPKALASGDQTVFYWKGNV 
           ________11______________________________________________________________________________________________________________ 

           _______________________________________________________________________________________________________227______________ 
 2bfg(H) : TPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNAPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFE 
         :                                                                                                                          
 1w91(A) : TPPKDYNKWRDLIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFE 
           _______________________________________________________________________________________________________227______________ 

           ________252_____________________276____________________________________315_______________333____________________________ 
 2bfg(H) : YYYQELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDE 
         :                                                                                                                          
 1w91(A) : YYYQELEPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGGDYVDSFSYWTFSDVFEEMDVPKALFHGGFGLVALHSIPKPTFHAFTFFNALGDE 
           ________252_____________________276____________________________________315_______________333____________________________ 

           __________________________390_____________________414_________426_______________444______________________469____________ 
 2bfg(H) : LLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSESAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIE 
         :                                                                                                                          
 1w91(A) : LLYRDGEMIVTRRKDGSIAAVLWNLVMEKGEGLTKEVQLVIPVSFSAVFIKRQIVNEQYGNAWRVWKQMGRPRFPSRQAVETLRQVAQPHVMTEQRRATDGVIHLSIVLSKNEVTLIEIE 
           __________________________390_____________________414_________426_______________444______________________469____________ 

           _____________________                                                                                                    
 2bfg(H) : QVRDETSTYVGLDDGEITSYS                                                                                                    
         :                                                                                                                          
 1w91(A) : QVRDETSTYVGLDDGEITSYS                                                                                                    
           _____________________                                                                                                    

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.3
Translation
(A)
0.4
Closure
(%)
72.8
Bending Residues
( green )
  11 - 25
  227 - 228
  252 - 268
  276 - 277
  315 - 316
  333 - 334
  426 - 429
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
4.4
Translation
(A)
0.3
Closure
(%)
98.4
Bending Residues
( green )
  390 - 402
  414 - 416
  444 - 453
  469 - 470
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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