Conserved Hypothetical Protein Af2008

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Conserved Hypothetical Protein Af2008
  Conformer 1
(PDB)
1sfx (A)
  Conformer 2
(PDB)
1sfx (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 54 1.17   21 - 47   59 - 86
2 44 0.67   4 - 20   48 - 58   87 - 102

Sequence


           __________________20________________________47_________58__________________________86_____________________               
 1sfx(A) : HsNPLGELVKALEKLSFKPSDVRIYSLLLERGGrVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGEIERIEKfTDGS               
         :                                                                                                                          
 1sfx(B) : *SNPLGELVKALEKLSFKPSDVRIYSLLLERGGrVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLKEFKSSILGEIERIEKfT***               
           __________________20________________________47_________58__________________________86_____________________               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.4
Translation
(A)
0.2
Closure
(%)
77.6
Bending Residues
( green )
  20 - 21
  47 - 50
  58 - 59
  86 - 87
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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