Delta Prime

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Delta Prime
  Conformer 1
(PDB) 		1a5t  
  Conformer 2
(PDB) 		1jr3 (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 206 0.99   3 - 205   258 - 266
2 114 0.97   206 - 257   267 - 328

Sequence


           ________________________________________________________________________________________________________________________ 
 1a5t    : MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL 
         :                                                                                                                          
 1jr3(E) : MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALL 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________205___________________________________ 
 1a5t    : TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ 
         :                                                                                                                          
 1jr3(E) : TDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVPSGDWYSLLAALNHEQ 
           __________________________________________________________________________________205___________________________________ 

           ______________257______266____________________________________________________________________                           
 1a5t    : APARLHWLATLLMDALKR------vTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLP****                           
         :                                                                                                                          
 1jr3(E) : APARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL                           
           ______________257______266____________________________________________________________________                           

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		22.6
Translation
(A) 		0.2
Closure
(%) 		83.5
Bending Residues
( green ) 		  205 - 206
  257 - 258
  266 - 267
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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