Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase Fkpa

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase Fkpa
  Conformer 1
(PDB)
1q6u (A)
  Conformer 2
(PDB)
1q6h (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 142 0.66   80 - 222
2 62 0.37   17 - 79

Sequence


           _______________________________________________________________79_______________________________________________________ 
 1q6u(A) : AFKNDDQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGE 
         :                                                                                                                          
 1q6h(A) : AFKNDDQKSAYALGASLGRY-eNSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTLQAFEARVKSSAQAK-eKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGE 
           _______________________________________________________________79_______________________________________________________ 

           _____________________________________________________________________________________________                            
 1q6u(A) : APKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAP                            
         :                                                                                                                          
 1q6h(A) : APKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPGIPPNSTLVFDVELLDVK***                            
           _____________________________________________________________________________________________                            

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
13.6
Translation
(A)
-0.3
Closure
(%)
85.6
Bending Residues
( green )
  79 - 80
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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