Glial Cell-Derived Neurotrophic Factor

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glial Cell-Derived Neurotrophic Factor
  Conformer 1
(PDB)
1agq (D)
  Conformer 2
(PDB)
1agq (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 65 0.68   43 - 74   101 - 133
2 24 1.34   75 - 100

Sequence


           __________________________________73________________________100___________________________________                       
 1agq(D) : ***GCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTSDKVGQACCRPVAFDDDLSFLDDSLVYHILRKHSAKRCGCI                       
         :                                                                                                                          
 1agq(B) : KNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTS--vGQACCRPVAFDDDLSFLDDSLVYHILRKHSAKRCGCI                       
           __________________________________73________________________100___________________________________                       

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.0
Translation
(A)
-0.8
Closure
(%)
96.0
Bending Residues
( green )
  73 - 75
  100 - 102
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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