Glycerol Dehydrogenase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Glycerol Dehydrogenase
  Conformer 1
(PDB) 		1jq5 (A)
  Conformer 2
(PDB) 		1jpu (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 328 0.44   9 - 124   150 - 361
2 20 1.1   125 - 149

Sequence


           _______________________________________________________________________________________________________________________1 
 1jq5(A) : AAERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAAS 
         :                                                                                                                          
 1jpu(A) : *AERVFISPAKYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTLDTAKAVADELDAYIVIVPTAAS 
           _______________________________________________________________________________________________________________________1 

           23_______________________149____________________________________________________________________________________________ 
 1jq5(A) : TDAPTSALSVIYSDDGVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTL 
         :                                                                                                                          
 1jpu(A) : TDAPTSALSV-----gVFESYRFYKKNPDLVLVDTKIIANAPPRLLASGIADALATWVEARSVIKSGGKTMAGGIPTIAAEAIAEKCEQTLFKYGKLAYESVKAKVVTPALEAVVEANTL 
           23_______________________149____________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1jq5(A) : LSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDASREDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYA 
         :                                                                                                                          
 1jpu(A) : LSGLGFESGGLAAAHAIHNGFTALEGEIHHLTHGEKVAFGTLVQLALEEHSQQEIERYIELYLCLDLPVTLEDIKLKDASREDILKVAKAATAEGETIHNAFNVTADDVADAIFAADQYA 
           ________________________________________________________________________________________________________________________ 

           _______                                                                                                                  
 1jq5(A) : KAYKEK*                                                                                                                  
         :                                                                                                                          
 1jpu(A) : KAYKEKH                                                                                                                  
           _______                                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		15.7
Translation
(A) 		0.2
Closure
(%) 		1.8
Bending Residues
( green ) 		  123 - 125
  149 - 152
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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