Heat Shock Protein Hsp82

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Heat Shock Protein Hsp82
  Conformer 1
(PDB)
1hk7 (B)
  Conformer 2
(PDB)
1usv (E)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 158 1.72   276 - 442
2 82 0.59   443 - 524

Sequence


           ________________________________________________________________________________________________________________________ 
 1hk7(B) : *TKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDL----iKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNI 
         :                                                                                                                          
 1usv(E) : KTKPLWTRNPSDITQEEYNAFYKSISNDWEDPLYVKHFSVEGQLEFRAILFIPKRAPFDLkKNNIKLYVRRVFITDEAEDLIPEWLSFVKGVVDSEDLPLNLSREMLQQNKIMKVIRKNI 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________442__________________________________________________________________________ 
 1hk7(B) : VKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEF 
         :                                                                                                                          
 1usv(E) : VKKLIEAFNEIAEDSEQFEKFYSAFSKNIKLGVHEDTQNRAALAKLLRYNSTKSVDELTSLTDYVTRMPEHQKNIYYITGESLKAVEKSPFLDALKAKNFEVLFLTDPIDEYAFTQLKEF 
           ___________________________________________442__________________________________________________________________________ 

           ____________                                                                                                             
 1hk7(B) : EGKTLVDITKDF                                                                                                             
         :                                                                                                                          
 1usv(E) : EGKTLVDITKD*                                                                                                             
           ____________                                                                                                             

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.4
Translation
(A)
-0.7
Closure
(%)
96.6
Bending Residues
( green )
  442 - 443
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download