Histone H3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Histone H3
  Conformer 1
(PDB)
1kx5 (A)
  Conformer 2
(PDB)
1kx5 (E)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 90 0.24   40 - 129
2 20 5.34   20 - 39

Sequence


           _____________________________________39_________________________________________________________________________________ 
 1kx5(A) : ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 
         :                                                                                                                          
 1kx5(E) : ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 
           _____________________________________39_________________________________________________________________________________ 

           _______________                                                                                                          
 1kx5(A) : PKDIQLARRIRGERA                                                                                                          
         :                                                                                                                          
 1kx5(E) : PKDIQLARRIRGERA                                                                                                          
           _______________                                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
99.6
Translation
(A)
1.6
Closure
(%)
98.3
Bending Residues
( green )
  39 - 41
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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