Hypothetical Oxidoreductase Yiak

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Oxidoreductase Yiak
  Conformer 1
(PDB)
1s20 (G)
  Conformer 2
(PDB)
1nxu (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 278 0.56   4 - 176   195 - 197   205 - 205   219 - 331
2 36 0.89   178 - 194   198 - 204   206 - 218

Sequence


           ________________________________________________________________________________________________________________________ 
 1s20(G) : KVTFEQLKAAFNRVLISRGVDSETADACAEfARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKdRAIELAADHGIGLVALRNANHWrGGSYGW 
         :                                                                                                                          
 1nxu(B) : KVTFEQLKAAFNRVLISRGVDSETADACAEfARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKdRAIELAADHGIGLVALRNANHWrGGSYGW 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________174______________194_______204___________218_________________________________ 
 1s20(G) : QAAEKGYIGICWTNSIAVpPWGAKECRIGTNPLIVAIPSTPITvDssfSYGlEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPgYWKGSGsIVLDiATLLSDGASVAEVTQDNS 
         :                                                                                                                          
 1nxu(B) : QAAEKGYIGICWTNSIAVpPWGAKECRIGTNPLIVAIPSTPITvDssfSYGlEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPgYWKGSGsIVLDiATLLSDGASVAEVTQDNS 
           ___________________________________________174______________194_______204___________218_________________________________ 

           ________________________________________________________________________________                                         
 1s20(G) : DEYGISQIFIAIEVDKLIDGPTRDAKLQRIdYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLEH                                         
         :                                                                                                                          
 1nxu(B) : DEYGISQIFIAIEVDKLIDGPTRDAKLQRIdYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALA**                                         
           ________________________________________________________________________________                                         

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.0
Translation
(A)
-0.1
Closure
(%)
98.6
Bending Residues
( green )
  174 - 178
  194 - 195
  197 - 198
  204 - 206
  218 - 219
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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