Hypothetical Protein Ebha

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Ebha
  Conformer 1
(PDB)
2dgj (A)
  Conformer 2
(PDB)
2dgj (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 59 0.34   132 - 171   190 - 208
2 138 0.69   6 - 131   172 - 189
3 39 0.61   209 - 247

Sequence


           ________________________________________________________________________________________________________________________ 
 2dgj(A) : AgQLQHGIDDENATKQTQKYRDAEQSKKTAYDQAVAAAKAILNKQ-dKAAVDRALQQVTSTKDALNGDAKLAEAKAAARQNLGTLNHITNAQRTALEGQINQATTVDGVNTVKTNANTLD 
         :                                                                                                                          
 2dgj(B) : *GQLQHGIDDENATKQTQKYRDAEQSKKTAYDQAVAAAKAILNKQTdKAAVDRALQQVTSTKDALNGDAKLAEAKAAARQNLGTLNHITNAQRTALEGQINQATTVDGVNTVKTNANTLD 
           ________________________________________________________________________________________________________________________ 

           _131___________________________________169_________________189_____________205__________________________________________ 
 2dgj(A) : GAnSLQGAINDKDATLRNQNYLDADESKRNAYTQAVTAAEGILNKQTGGNTSKADVDNALNAVTRAKAALNGAENLRNAKTSATNTINGLPNLTQLQKDNLKHQVEQAQNVVGVNGVKDK 
         :                                                                                                                          
 2dgj(B) : GAnSLQGAINDKDATLRNQNYLDADESKRNAYTQAVTAAEGILNKQTGGNTSKADVDNALNAVTRAKAALNGAENLRNAKTSATNTINGLPNLTQLQKDNLKHQVEQAQNVVGVNGVKDK 
           _131___________________________________169_________________189_____________205__________________________________________ 

           _____                                                                                                                    
 2dgj(A) : GNLEH                                                                                                                    
         :                                                                                                                          
 2dgj(B) : GN***                                                                                                                    
           _____                                                                                                                    

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.9
Translation
(A)
-0.1
Closure
(%)
41.4
Bending Residues
( green )
  131 - 132
  169 - 172
  189 - 190
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
11.0
Translation
(A)
0.2
Closure
(%)
39.6
Bending Residues
( green )
  205 - 209
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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