Lectin-D2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lectin-D2
  Conformer 1
(PDB)
1uha (A)
  Conformer 2
(PDB)
1ulm (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 41 0.27   3 - 43
2 37 0.33   44 - 80

Sequence


           ________________________________________42________________________________________                                       
 1uha(A) : APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD                                       
         :                                                                                                                          
 1ulm(B) : APECGERASGKRCPNGKCCSQWGYCGTTDNYCGQGCQSQCDYWRCGRDFGGRLCEEDMCCSKYGWCGYSDDHCEDGCQSQCD                                       
           _______________________________________142________________________________________                                       

Morph

Jmol._Canvas2D (Jmol) "jmolApplet"[x]
Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
2.7
Translation
(A)
-0.1
Closure
(%)
42.1
Bending Residues
( green )
  595 - 617
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

Download and extract PyMOL PML script file Download