Dynamin-1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dynamin-1
  Conformer 1
(PDB) 		2x2e (D)
  Conformer 2
(PDB) 		2x2e (A)
  Window Length 11
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 260 0.87   32 - 296
2 40 1.61   12 - 31   297 - 310   733 - 738

Sequence


           _____________________29_________________________________________________________________________________________________ 
 2x2e(D) : EDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 
         :                                                                                                                          
 2x2e(A) : EDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYS 
           _____________________29_________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2x2e(D) : PHVLNLTLVDLPGtKVPVGDQPPDIEFQIRDlqFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLdEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITA 
         :                                                                                                                          
 2x2e(A) : PHVLNLTLVDLPGtKVPVGDQPPDIEFQIRDlqFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLDLdEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITA 
           ________________________________________________________________________________________________________________________ 

           _____________________________________291_____________________________________________________                            
 2x2e(D) : ALAAERKFFLSHPSYRHLADRgTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDElRyHALKEALSIIG                            
         :                                                                                                                          
 2x2e(A) : ALAAERKFFLSHPSYRHLADRgTPYLQKVLNQQLTNHIRDTLPGLRNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDElRyHALKEALSIIG                            
           _____________________________________291_____________________________________________________                            

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		16.1
Translation
(A) 		-1.7
Closure
(%) 		99.9
Bending Residues
( green ) 		  29 - 32
  291 - 297
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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