Lactoferrin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Lactoferrin
  Conformer 1
(PDB) 		1dsn  
  Conformer 2
(PDB) 		1eh3 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 156 0.41   58 - 64   92 - 215   226 - 250
2 146 0.63   7 - 57   65 - 91   216 - 225   251 - 308

Sequence


           ______________________________________________________57_____64_________________________91______________________________ 
 1dsn    : RRRSVQWCAVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLSGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGLRR 
         :                                                                                                                          
 1eh3(A) : **RSVQWCAVSQPEATKCFQWQRNMRRVRGPPVSCIKRDSPIQCIQAIAENRADAVTLDGGFIYEAGLAPYKLRPVAAEVYGTERQPRTHYYAVAVVKKGGSFQLNELQGLKSCHTGLRR 
           ______________________________________________________57_____64_________________________91______________________________ 

           __________________________________________________________________________________________214________225________________ 
 1dsn    : TAGWNVPIGTLRPFLNWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIRESTVFEDLSDEAERDEYELLCPDNTRKPVDK 
         :                                                                                                                          
 1eh3(A) : TAGWNVPIGTLRPFLDWTGPPEPIEAAVARFFSASCVPGADKGQFPNLCRLCAGTGENKCAFSSQEPYFSYSGAFKCLRDGAGDVAFIKESTVFEDLSDEAERDEYELLCPDNTRKPVDK 
           __________________________________________________________________________________________214________225________________ 

           ______250_____________________________________________________________________________                                   
 1dsn    : FKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDS***********                                   
         :                                                                                                                          
 1eh3(A) : FKDCHLARVPSHAVVARSVNGKEDAIWNLLRQAQEKFGKDKSPKFQLFGSPSGQKDLLFKDSAIGFSRVPPRIDSGLYLGSGYFTA                                   
           ______250_____________________________________________________________________________                                   

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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		173.7
Translation
(A) 		0.2
Closure
(%) 		14.0
Bending Residues
( green ) 		  89 - 93
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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