DynDom - Protein Domain Motions

Oxalate--Coa Ligase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Oxalate--Coa Ligase
Conformer 1 (PDB)	8aff (A)
Conformer 2 (PDB)	8aff (I)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	425	0.13	11 - 435
2	89	0.35	436 - 530

Sequence

`________________________________________________________________________________________________________________________` `8aff(A) : ASFNDTFSVSDNVAVIVPETDTQVTYRDLSHMVGHFQTMFTNPNSPLYGAVFRQDTVAISMRNGLEFIVAFLGATMDAKIGAPLNPNYKEKEFNFYLNDLKSKAICVPKGTTKLQSSEIL` `:` `8aff(I) : ASFNDTFSVSDNVAVIVPETDTQVTYRDLSHMVGHFQTMFTNPNSPLYGAVFRQDTVAISMRNGLEFIVAFLGATMDAKIGAPLNPNYKEKEFNFYLNDLKSKAICVPKGTTKLQSSEIL` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `8aff(A) : KSASTFGCFIVELAFDATRFRVEYDIYSPEDNYKRVIYRSLNNAKFVNTNPVKFPGFARSSDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPLFHVHGLIGV` `:` `8aff(I) : KSASTFGCFIVELAFDATRFRVEYDIYSPEDNYKRVIYRSLNNAKFVNTNPVKFPGFARSSDVALILHTSGTTSTPKTVPLLHLNIVRSTLNIANTYKLTPLDRSYVVMPLFHVHGLIGV` `________________________________________________________________________________________________________________________` `________________________________________________________________________________________________________________________` `8aff(A) : LLSTFRTQGSVVVPDGFHPKLFWDQFVKYNCNWFSCVPTISMIMLNMPKPNPFPHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPPGKRKPGTVGQPQGVTVVI` `:` `8aff(I) : LLSTFRTQGSVVVPDGFHPKLFWDQFVKYNCNWFSCVPTISMIMLNMPKPNPFPHIRFIRSCSSALAPATFHKLEKEFNAPVLEAYAMTEASHQMTSNNLPPGKRKPGTVGQPQGVTVVI` `________________________________________________________________________________________________________________________` `___________________________________________________________430__________________________________________________________` `8aff(A) : LDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGVPDDMYGQVVQAAIVLKKGEKM` `:` `8aff(I) : LDDNDNVLPPGKVGEVSIRGENVTLGYANNPKANKENFTKRENYFRTGDQGYFDPEGFLVLTGRIKELINRGGEKISPIELDGIMLSHPKIDEAVAFGV------qVVQAAIVLKKGEKM` `___________________________________________________________430__________________________________________________________` `_____________________________________________` `8aff(A) : TYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAETF` `:` `8aff(I) : TYEELVNFLKKHLASFKIPTKVYFVDKLPKTATGKIQRRVIAET*` `_____________________________________________`

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	117.8
Translation (A)	0.4
Closure (%)	22.0
Bending Residues ( green )	430 - 436
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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