DynDom - Protein Domain Motions

Aspartyl Trna Synthetase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

Property	Value
Name	Aspartyl Trna Synthetase
Conformer 1 (PDB)	1eqr (A)
Conformer 2 (PDB)	1eqr (B)
Window Length	5
Minimum ratio	1.0
Minimum domain size	20

Domains

Domain	Size	Backbone RMSD (A)	Residues
1	361	1.38	3 - 236 238 - 251 253 - 269 426 - 426 428 - 431 436 - 438 449 - 450 455 - 458 461 - 465 472 - 474 483 - 489 502 - 507 509 - 510 528 - 586
2	223	1.2	237 - 237 252 - 252 270 - 425 427 - 427 432 - 435 439 - 448 451 - 454 459 - 460 466 - 471 475 - 482 490 - 501 508 - 508 511 - 527

Sequence

`________________________________________________________________________________________________________________________` `1eqr(A) : MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA` `:` `1eqr(B) : MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEA` `________________________________________________________________________________________________________________________` `_________________________________________________________________________________________________________________236____` `1eqr(A) : RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT` `:` `1eqr(B) : RLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMT` `_________________________________________________________________________________________________________________236____` `________251_______________269___________________________________________________________________________________________` `1eqr(A) : APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKG` `:` `1eqr(B) : APQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKG` `________251_______________269___________________________________________________________________________________________` `______________________________________________________________425___431_435__________448___454_458____465___471________4` `1eqr(A) : LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING` `:` `1eqr(B) : LEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVING` `______________________________________________________________425___431_435__________448___454_458____465___471________4` `82____489_________501__506__________________527_______________________________________________________________` `1eqr(A) : YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN` `:` `1eqr(B) : YEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPTALAELSIQVVKKAENN` `82____489_________501__506__________________527_______________________________________________________________`

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.

play backwards

pause

play forwards

Domain Pairs

Property	Value
Fixed Domain ( blue )	1
Moving Domain ( red )	2
Rotation Angle (deg)	15.9
Translation (A)	-0.2
Closure (%)	27.8
Bending Residues ( green )	192 - 193
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Putative phosphoglycolate phosphatase

PyMOL Script

Download and extract PyMOL PML script file

Download