Phosphoribosylaminoimidazole-Succinocarboxamide Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Phosphoribosylaminoimidazole-Succinocarboxamide Synthase
  Conformer 1
(PDB) 		1obg (A)
  Conformer 2
(PDB) 		2cnv (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 143 0.54   74 - 74   116 - 257   259 - 264
2 75 0.37   17 - 21   39 - 67   258 - 258   265 - 304
3 67 0.41   4 - 16   22 - 38   75 - 111

Sequence


           _________12_______21_______________38___________________________67_____74__________________________________111__________ 
 1obg(A) : SITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIV 
         :                                                                                                                          
 2cnv(A) : SITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVDIAPGKTIFDYLPAKLSEPKYKTQLEDRSLLVHKHKLIPLEVIV 
           _________12_______21_______________38___________________________67_____74__________________________________111__________ 

           ________________________________________________________________________________________________________________________ 
 1obg(A) : RGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTKAEQGEHDENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSS 
         :                                                                                                                          
 2cnv(A) : RGYITGSAWKEYVKTGTVHGLKQPQGLKESQEFPEPIFTPSTK------dENISPAQAAELVGEDLSRRVAELAVKLYSKCKDYAKEKGIIIADTKFEFGIDEKTNEIILVDEVLTPDSS 
           ________________________________________________________________________________________________________________________ 

           _____________257____264__________________________________________                                                        
 1obg(A) : RFWNGASYKVGESQDSYDKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYETLTGSKWSH                                                        
         :                                                                                                                          
 2cnv(A) : RFWNGASYKVGESQDSYDKQFLRDWLTANKLNGVNGVKMPQDIVDRTRAKYIEAYETLTGSKWSH                                                        
           _____________257____264__________________________________________                                                        

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Domain Pairs

Fixed Domain Moving Domain Rotation Angle Translation   (A) Closure Bending Residues  
1 2 6.6 -0.1 82.5   67 - 74   257 - 259   264 - 265 Bending Region Analysis
1 3 7.6 -0.3 73.3   74 - 75   111 - 116 Bending Region Analysis
3 2 4.6 0.0 75.0   12 - 17   21 - 22   38 - 39   67 - 75 Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification:

No Contacts

Conformer 1 Contact:
Residue 3 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 3

Movement classification: Hinge

PyMOL Script

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